PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116503.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 253aa    MW: 28276.7 Da    PI: 8.9714
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-0592114123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F+++  L  H++ H
  XP_009116503.1  92 FECHYCFRNFPTSQALGGHQNAH 114
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.41E-688119No hitNo description
PfamPF139122.0E-591116IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.9992119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0010091Biological Processtrichome branching
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDERNAERET KDFMNVESFS QLPFFRRPPS KDKNPKPVRL FGKDFTTGEY SGTTSQQDHS  60
ETKHKEDEEV AEDDQTGDNG KDNSRSNNNR RFECHYCFRN FPTSQALGGH QNAHKRERQL  120
AKRGASSYFH HPDANLYGYR HYPSWSSTSL PAARFYGGNI PGSGPSSSFH TRPINGSPLG  180
LWRSSSSFRG VYNPNAAFTS HVSSDNSILS SLAGSQPHPP LQVGGSAAQN RMSSYRYGLS  240
PNVQDHVSLD LNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116503.10.0PREDICTED: zinc finger protein GIS
RefseqXP_013659894.10.0PREDICTED: zinc finger protein GIS-like
RefseqXP_013659936.10.0PREDICTED: zinc finger protein GIS-like
SwissprotQ84WI01e-107GIS_ARATH; Zinc finger protein GIS
TrEMBLA0A078EZN80.0A0A078EZN8_BRANA; BnaA09g37260D protein
TrEMBLM4CT360.0M4CT36_BRARP; Uncharacterized protein
STRINGBra007378.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24951949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.11e-104C2H2 family protein